Liquid Biopsy in Non-Small Cell Lung Cancer—Current Status and Future Outlook

A Narrative Review

Elisabeth Smolle; Valentin Taucher; Jörg Lindenmann; Martin Pichler; Freyja-Maria Smolle-Juettner

Disclosures

Transl Lung Cancer Res. 2021;10(5):2237-2251. 

In This Article

Results

Circulating Tumor DNA

CtDNA counts among the group of cfDNA. In 1948 already, little quantities of cfDNA in blood plasma or -serum samples of human beings, have been detected. In 1977, cfDNA was outlined in blood samples of cancer patients, and after 17 further years it was genotyped as a tumor marker.[27] ctDNA originates from tumor cell apoptosis, necrosis and extracellular vesicles which tumor cells secrete. Contrary to genomic DNA, ctDNA which is found in blood samples is at large part fragmented, ranging from 180 base pairs (bp) to 1,000 bp, if the origin is apoptosis, and 10,000 bp if the origin is necrosis.[28] Extracellular vesicles are of crucial importance for intercellular communication, thus containing large fragments of double-stranded DNA (>10 kb) embodying KRAS-, p53- and EGFR-mutations.[29,30] Of note, ctDNA only accounts for a very small fraction, namely <1% of total cfDNA, meaning that conventional sequencing approaches are not sensitive enough for the detection of EGFR mutations in cfDNA. Recently, novel approaches have been found to increase the sensitivity of assays for the detection of EGFR mutations.[31,32] The amplification-refractory mutation system (ARMS)/Scorpion assay contains primers that use specific probes with enhanced allelic specificity, which are able to detect and differentiate WT, as opposed to mutant DNA, reducing the degree of background to a minimum. When primers match completely, a selective amplification of mutated gene sequences is realized. Peptide nucleic acids (PNAs), on the contrary, are utilized to selectively suppress the WT PCR manufacture. Next-generation sequencing (NGS) is a method for the detection of a subgroup of specific genes, analyzing the entire genome of a given tumor. Very differently to techniques which can only outline pre-known mutations, individual resistance mechanisms can be determined by NGS. NGS makes use of DNA polymerases, catalyzing the consolidation of fluorescence-labeled nucleotides into a DNA template, simultaneously with sequential DNA synthesis. This process is extended across millions of fragments contemporaneously.[33]

Of note, also urine and saliva can be used for the detection of EGFR mutations, since DNA, mRNA, micro RNA (miRNA), proteins and metabolites are incorporated in saliva, which serve as potential predictive biomarkers for either cancer, or other systemic conditions.[34] Short-length, tumor-derived DNA fragments can also be detected in the urine, which serves as a method, for example, to detect KRAS mutations in colon cancer patients.[35] Recently, a mutation-enriched PCR coupled with NGS was used as a urine platform to detect T790M- and L858R mutations, and also exon 19 deletions in NSCLC.[36] This urine platform proved good sensitivity with 93% for T790M mutations, 80% for L858R mutations and 83% for exon 19 deletions (with tissue-based results used as a reference).[36]

For ctDNA extraction and analysis, attention has to be paid to accurate blood sample collection, handling, and storage procedures, in order to enable an exact molecular analysis.[4] Factors that influence the accuracy of ctDNA analysis are the way of storing and blood sample transport, but also how much time elapses between blood taking and the extraction of plasma. The two most prominent methods for the acquisition of ctDNA is the use of ethylenediaminetetra-acetic acid (EDTA) tubes for blood plasma acquisition, as well as utilizing preservative tubes, manufactured specifically for cell-free DNA extraction. The amount of blood that has to be drawn is not standardized yet, however, most institutions collect 20 mL.[37] EDTA tubes are easily available and cost-efficient compared to other preservative tubes. However, the use of EDTA means that the blood sample has to be processed shortly after acquisition.[38] Conversely, special preservative tubes for ctDNA, such as Streck (La Vista, Nevada) Cell-Free DNA BCT effectively preserves the quality of tiny fragments of DNA, lasting several days, upon storage at room temperature, without the requirement of on-site processing techniques.[25]

CfDNA, on the contrary, reflects the sum of all ctDNA, irrespective of origin. CtDNA only describes a subset of DNA specifically originating from the tumor.[4] CfDNA collection tubes contain preservative reagents stabilizing blood cells with nuclei, so their disintegration and the consequential leaking of genomic DNA into the tube is averted. Moreover, the way exonuclease normally works, is blocked in the conservant tube, so cfDNA degradation is inhibited.[39] In case EDTA tubes are used instead of preservative tubes, samples have to be processed within 1 to 2 hours after collection.[40] A major hazard to ctDNA analysis is impurity caused by genomic DNA, released from lysed leukocytes, which happens when blood samples are not immediately handled and processed. Notably, even upon optimal sample storing, shipping and processing, the proportion of tumor-derived mutant forms of an allele is very small, often less than 1% of the total DNA (mutant plus wild type) for a given gene sequence.[41] Keeping this in mind, it becomes evident that the contamination of the cfDNA sample by DNA from the genome, caused by incautious sample processing, leads to a consequential dilution of mutant cfDNA fragments, even below detection level. It is also recommended to centrifuge the blood tube twice (the so-called double-spin technique), once in the original collection tube and then a second time in another tube after having transferred the plasma, ensuring a more efficient purification.

In clinical practice, more than one technique has been engineered to analyse the presence and quality of ctDNA. For example, the amplification of single gene loci, or else, a whole genome sequencing approach.[42,43] In the first studies on this topic, polymerase chain reaction (PCR)-based amplification of certain mutations, specifically linked to cancer, was utilized.[21] Allele-specific PCR makes the trustworthy amplification of certain and well-known cancer-associated mutations possible. Still, sensitivity especially in early-stage lung cancer is very low. Digital PCR poses an improvement, because samples are partitioned into multiple and smaller reactions, which considerably increases sensitivity.[22] Conventional as well as digital PCR-based approaches test for a confined number of common and well-defined mutations. Hence, this approach is only applicable for patients with common driver mutations. NGS has expanded the applicability of ctDNA testing, utilizing a combination of multiplexed PCR assays which are designed to intensify only a minor number of hot-spot regions, screening for gene mutations and quantifying the fraction of mutated alleles.[24,44] The limitation of this technique is, that only a small number of genes is interrogated and copy number variations or structural variants cannot be detected if the breakpoint sequence has not been previously characterized. There is also an approach combining hybrid capture followed by NGS, which maintains an extremely high level of sensitivity while it allows for a larger variety of gene aberrations to be quantified.[45] Additionally, deep sequencing of the whole exome,[46] or genome[47,48] can provide comprehensive ctDNA profiling. However, deep sequencing techniques are exclusively used in individuals with an advanced malignant condition, because the costs per sample are considerable, and the sensitivity is rather low.

CTCs

CTCs have to be enriched in blood samples for optimum detection, with can be carried out by label-dependent or label-independent strategies. The label-dependent method targets specific antigens on target cells, using complementary molecules, like antibodies. Conjugation of these complementary molecules is realized by magnetic beads or specific surfaces in a microfluidics platform. In terms of label-dependent approaches, assays based on immuno-magnetism, targeting EpCAM, are applied most widely.[49] Label-independent CTC enrichment methods separate CTCs, making use of their physical rather than their biological properties (i.e., size, density, electrical properties, inertial effect of flow). Variations in size are utilized by filtering techniques, as well as the CTCs ability to deform, when compared to other blood cells.[50] For example, the cell size in small cell lung cancer (SCLC) and NSCLC ranges from 7.2 to 15 μm in diameter, as it was measured in biopsies,[51] however, CTCs can be considerably smaller.

CTCs as tumor markers usually provide a good-quality immunohistochemical staining. Thus, not only EGFR mutations can be outlined (as it is mainly done with ctDNA), but also ALK-, ROS1- and RET rearrangements, MET amplifications, as well as BRAF- and HER2 mutations.[52] While it is rather difficult to detect ALK rearrangements in ctDNA,[53] ALK status of CTCs can be assessed relatively easily by immunohistochemistry or by fluorescence in situ hybridization (FISH).[54] Still, the applications and studies that involve CTCs in genotyping of lung cancer remain few, as compared to the analysis techniques utilizing ctDNA. A considerable limitation would be the heterogeneous number of CTCs, varying widely among different cancer specimens, but also the fact that physical properties of CTCs change considerably during the disease course. In the majority of patients suffering from metastatic colorectal-, breast- or prostate cancer, CTCs can be outlined with good reliability. In lung cancer, however, CTC detection is still applicable only in selected cases, because only approximately 10% of patients suffering from NSCLC show ≥5 CTCs per 7.5 mL.[55]

Testing for EGFR Mutations

EGFR gene mutations have been found to occur in 43% of lung adenocarcinomas in subjects with a negative smoking history, and in 11% of lung adenocarcinomas of smokers.[56] Worldwide, the highest rates of EGFR mutations have been reported in the Asian ethnicity.[57] Multiple randomized trials have confirmed the benefit on progression-free survival (PFS) by treatment with the EGFR TKIs erlotinib, gefitinib and afatinib as compared to chemotherapy in the case of EGFR-mutant metastatic NSCLC.[58–60] Thus, testing for EGFR mutations is one of the key factors in molecular analysis of NSCLC, necessary to provide optimum and tailored treatment for each patient. Tissue analysis remains the gold standard in screening for EGFR mutations. However, when tissue samples do not suffice for molecular testing, or the risk of biopsy is too high, liquid biopsy often becomes the only option.

The cobas EGFR Mutation Test v2 is a real-time PCR-based assay, originally applied on formalin-fixed paraffin-embedded tumor specimens.[61] In the ENSURE clinical trial, comparing first line erlotinib administration with gemcitabine in combination with cisplatin, the application on plasma samples was validated.[60]

The sensitivity of testing for EGFR mutations via ctDNA testing is dependent upon the total amount of ctDNA in the bloodstream, which can vary between patients, but also in one and the same patient at different timepoints. The half-life of ctDNA has been shown to be <2 hours.[62] Tumor burden also strongly determines ctDNA concentration, and patients with more extensive disease tend to harbor higher levels of ctDNA.[45] Previous data indicate, that extrathoracic disease (M1b) improves the likelihood of detecting EGFR mutations by liquid biopsy, as compared to intrathoracic disease (M1a or M0).[63] Of note, currently available ctDNA tests for EGFR prioritize specificity over sensitivity, so false negative results are far more common than false positives.[64] Digital PCR- or NGS-based approaches screening for EGFR mutations may achieve lower detection limits compared to conventional PCR, thus providing a better sensitivity. It has to be kept in mind, that platforms testing for multiple common driver mutations in NSCLC are best suited to interpret negative results for EGFR mutations. For example, if a patient is tested negatively for EGFR mutations, but positive for KRAS mutation, the negative predictive value is much higher, as in a test for EGFR only which comes back negative.[42]

An algorithm showing the current recommendation for EGFR mutation status analysis is illustrated in Figure 1.

Figure 1.

Current paradigm for the use of plasma genotyping in clinical practice. (A) In patients diagnosed with NSCLC, when tissue samples cannot be used for mutation analysis, ctDNA genotyping by means of plasma analysis is recommended. EGFR tyrosine kinase inhibitor (TKI) treatment may be initiated based of plasma ctDNA testing. (B) When patients acquire resistance to first line EGFR TKI treatment, liquid biopsies can compensate tumor biopsies—given the fact that also tissues analysis is often not accurate in diagnosing the complex and heterogeneous pattern of acquired drug resistance. Figure adapted after Huang et al. (3).

Plasma miRNAs, Exosomes and Tumor-educated Platelets (TEPs)

Liquid biopsy not only comprises the analysis of CTCs or ctDNA, but also the analysis of miRNAs, exosomes, tumor-associated antigens and TEPs.[65] Small non-coding RNAs, including miRNA, are stabilized by processing proteins in the circulation—contrary to cell-free RNA which is rapidly degraded in the bloodstream. miRNA can be quantified using quantitative reverse transcription PCR (RT-PCR).[66] However, in the previously published studies about the clinical application of miRNA screening as a liquid biopsy technique, different sets of markers and thresholds for positivity have been used and thus, circulating miRNA-based techniques are at present not applicable for everyday clinical routine. In essence, miRNAs are small regulatory RNA molecules (about 22 nt in size), modulating the activity of specific mRNA targets and playing an important role in a vast variety of biochemical processes.[67] In a carefully designed study on prostate cancer by Mitchell and colleagues, the role of miRNA as cancer detection biomarkers was analyzed.[66] MiRNAs have been shown to be dysregulated in cancers,[68] their expression patterns in human cancers are tissue-specific,[69] and they are usually highly preserved in formalin-fixed tissue samples.[70] The authors of this study assumed that miRNAs exhibit good stability in plasma and serum as well. First, small RNAs with a size range of 18–24 nt were isolated from plasma samples using radioactive labelling.[66] A fraction of RNAs with a size of ≈22 nt, characteristic of miRNAs, was isolated from the pool of blood-based RNA. RT-PCR analysis was performed in order to clarify whether these RNAs feature markers characteristic of miRNAs. Indeed, 93% of sequences comprised characteristic miRNA markers, serving as a proof that miRNAs are present in human plasma.[66] Three miRNAs (miR-15b, miR-16 and miR-24) were specifically quantified using TaqMan quantitative RT-PCR analysis, and were all readily detectable in the plasma of each analyzed individual. Interestingly, when testing the stability of miRNAs in plasma, incubation of plasma at room temperature for up to 24 hours, or subjecting them to eight cycles of freeze-thawing had but a minimal effect on miRNA levels. Next, the presence of tumor-derived miRNA in plasma was proven in a mouse xenograft model of prostate cancer.[71] Two miRNAs, miR-629 and miR-660 were both found to be expressed in prostate cancer cells. Levels of these miRNAs were basically not detectable in healthy control mice, but in each of the tumor-bearing mice, they were readily detected.[66] Moreover, levels of these miRNAs were also moderately correlated with tumor mass, indicating that the abundance of plasma miRNAs reflects overall tumor burden. Noteworthy, in this xenograft experiment, miRNAs were found not to be associated with CTCs, as demonstrated by two centrifugation processes, which should pellet any intact cells. However, in the pellet material no miRNAs were found, but still, miRNAs were present in the supernatant remaining after the final 12,000 ×g centrifugation. As a final step, Mitchell et al. sought to outline miRNAs as disease biomarkers in patients suffering from prostate cancer. Candidate miRNAs were outlined based on previously published data on miRNA expression profiles in prostate cancer—and additionally, healthy subjects were screened for these miRNAs in their plasma, and miRNAs that were found in the healthy donors were excluded.[66] As a result, miR-100, miR-125b, miR-141, miR-143, miR-205, and miR-296 remained as candidate prostate cancer biomarkers. Next, these candidate miRNAs were analyzed in 25 individuals suffering from metastatic prostate cancer, and in 25 healthy male control subjects. MiR-141 showed the most striking differential expression, being 46-fold overexpressed in the serum of prostate cancer patients, when compared with the healthy controls.[66] Notably, serum levels of miR-141 could detect individuals with prostate cancer with a sensitivity of 60% and a specificity of 100%. Moreover, miR-141 and prostate-specific antigen (PSA) values moderately correlated, as shown by Pearson and Spearman correlation analysis.

Also for NSCLC, several studies have focused on the specific impact of circulating miRNAs, when used as biomarkers, applying high-throughput technologies.[72,73] An increased expression of miR-29, as well as the decrease of seven miRNAs (miR-146b, miR-221, let-7a, miR-155, miR-17-5, miR-27a and miR-106a) was seen in a RT-PCR analysis in serum samples of early-stage NSCLC patients.[74] When a certain panel of miRNAs from the blood plasma (miR-21, miR-126, miR-210 and miR-486-5p) was used as a diagnostic tool for the detection of NSCLC, sensitivity was 86.2% and specificity was 96.6%. Interestingly, adenocarcinomas were more likely diagnosed using these miRNAs, as opposed to squamous cell carcinomas.[75] A panel comprising the miRNAs miR-483, miR-193a-3p, miR-25, miR-214 and miR-7 showed a significantly stronger expression in NSCLC patients when compared to control subjects.[76] When used as detection tools for early pro-tumorigenic changes in high-risk individuals, circulating miRNA signatures, composed of reciprocal ratios of 24 miRNAs with both diagnostic and prognostic value could be outlined.[77] Consecutively, this miRNA Signature Classifier (MSC) has been approved in a cohort comprising 1,000 consecutive blood plasma specimens, stemming from 4,099 tumor patients, showing a good diagnostic performance with a sensitivity of 87% and a specificity of 81%.[78] Still, the application of routinely using circulating miRNAs in everyday clinical practice has not been implemented. The main reason is the heterogeneity of existing studies on miRNAs as cancer detection biomarkers, their limited sample size, a lack of prospective analysis and lack of a large external and unbiased validation.[79]

Another approach to liquid biopsy is through exosome analysis.[80] Exosomes are defined as round, nano-sized vesicles, their diameter ranging between 40 and 100 nm, and their density being about 1.13–1.19 g/mL.[81] Immune cells, stem cells, as well as malignant cells count among the cell species that routinely release exosomes.[82] Exosomes are created via the endocytic pathway, and certain multivesicular bodies, stemming from early endosome maturation, release them into the extracellular space. The release of exosomes takes place under the endosomal sorting complex, which is required for their transport, and with the aid of related proteins.[83] Multivesicular bodies can fuse with the plasma membrane, inducing the release of exosomes into the extracellular space.[84] Because of their endocytic origin, the composition of exosomes reflects that of their parental cells. Moreover, the exosomes' lipid bilayer is stable and relatively resistant to degradation, allowing for the identification of the original cells.[85] Tumor-derived exosomes are related to tumor progression.[86] Exosome function in tumor cells may considerably differ from normal cells, and exosomes are generally more abundant in tumor cells. Exosome levels were found to be upregulated in body fluids of lung cancer patients, which means that exosomes might play a crucial role in the development and disease progression of lung cancer.[80] One study[87] assessed the association of circulating cancer exosome levels, exosomal small RNAs and exosomal miRNAs with the presence of lung adenocarcinoma, and their influence on prognosis. Plasma samples of 27 individuals were analyzed. Exosome levels were indeed higher in the adenocarcinoma- compared to the control group, with mean plasma values of 2.85 versus 0.77 mg/mL, respectively. Rodriguez and colleagues demonstrated recently that exosome levels in bronchoalveolar lavage samples from lung cancer patients were significantly elevated, when compared to that of non-tumor bearing subjects.[88] In a study on lung cancer cells, the TP53 pathway was found to be involved in exosome secretion into the medium.[89] In general, tumor-derived exosomes play an important role in tumor angiogenesis and invasion, and they have the potential to proliferate in receptor cells, thereby facilitating disease progression and metastatic spread.[90] In recent years, research has put increasing focus on the investigation of certain molecules in exosomes, which form the exosomes' pathophysiological properties. Thereby it was found that tumor plasma contained a higher level of exosome-related miRNA, meaning that altered molecular profiles of exosomes are possibly involved in tumor-associated biological processes.[80] The exosomal cargo, which is usually significantly dysregulated in cancer tissue, may serve as a diagnostic, prognostic and predictive biomarker for lung cancer, as accumulating evidence suggests. Modification of receptor cells by tumor-derived exosomes is a likely event in carcinogenesis, as shown in a study by Wang et al., where treatment with tumor-derived exosomes led to a differential expression of long non-coding RNAs and of protein-coding mRNA as well.[91] All relevant exosome-related biomarker studies published have focused primarily on exosome-derived miRNAs and proteins. For instance, Cazzoli et al. outlined 742 different miRNAs for an in-depth analysis, comparing 10 patients with lung adenocarcinoma, 10 with lung granulomas and 10 current smokers with no known lung disease.[92] Based on their findings, the authors of this study developed a screening panel comprising four miRNAs (miR-378a, miR-379, miR-139-5p and miR-200b-5p) to distinguish potentially malignant lung nodules from non-nodules. The panel showed 87.5% sensitivity and 72% specificity.[92] Additionally, a diagnostic panel was developed, comprising six miRNAs (miR151a-5p, miR-30a-3p, miR-200b-5p, miR-629, miR-100, and miR-154-3p), to discriminate between lung adenocarcinoma and -granuloma. With this screening panel, a sensitivity of 96% and a specificity of 60% was achieved. Another research group[93] established a screening panel which consists of six miRNAs (miR-19b-3p, miR-21-5p, miR-221-3p, miR-409-3p, miR-425-5p, and miR-584-5p), for detection in plasma samples for the diagnosis of lung adenocarcinoma. In particular, miR-19-3p, miR-21-5p, and miR-221-3p were strikingly upregulated in exosomes, which had been extracted from peripheral blood plasma from patients with lung adenocarcinoma.[93]

Apart from miRNAs, the peripheral blood of cancer patients is also a pool of so-called TEPs.[44] Healthy cells present in the tumor microenvironment are continuously released into the blood stream of cancer patients, and TEPs count among them.[94] There is a well-known interaction between blood platelets and tumor cells, affecting tumor growth and dissemination.[95] This interaction affects the RNA profile of blood platelets.[94] In a study from 2015, mRNA sequencing of TEPs from 283 platelet samples was performed, and sequencing profiles of 228 patients with localized and metastatic disease were compared to profiles of 55 healthy controls. TEP sequencing could distinguish tumor patients from the healthy individuals with 96% accuracy.[94] Across six different tumor types (among them also NSCLC), the location of the primary tumor could be determined with an accuracy of 71%. Tumor-specific educational programs in TEPs were primarily dependent on tumor type, less so by tumor stage or the presence of metastases. Still, previous research has shown an influence of blood platelets on tumor cell dissemination,[96] as well as metastatic spread.[95] Although the above-mentioned study on TEPs suggests a possible future application as another liquid biopsy approach, more research on larger patient cohorts is still warranted until TEP-based liquid biopsy techniques are ready for implementation into clinical routine.

Liquid Biopsy in Today's Everyday Clinical Practice

Currently, applications for liquid biopsy testing in NSCLC are increasingly emerging. CfDNA testing is mainly performed in patients with early-stage and curable disease.[97] The presence of circulating tumor cfDNA after treatment with a curative intention, strongly correlates with minimal or molecular residual disease.[45,98] Recurrence of disease is predicted by the presence of cfDNA, signifying a worse outcome. A recent study evaluated the benefit of consolidation immunotherapy in patients with locally advanced NSCLC who underwent chemo-radiotherapy with a curative intention.[42] Consolidation therapy improved outcomes in patients with cfDNA minimal residual disease-positive status, whereas patients who had no evidence of minimal residual disease in cfDNA assessment, no benefit of consolidation immunotherapy was seen. Hence, cfDNA status as an indicator of minimal residual disease could guide decisions regarding adjuvant therapy after curative-intent treatment regimens.[97] According to recent investigations, about 40–50% of early-stage and curable NSCLC may be detected using NGS-based cfDNA screening techniques.[45]

In a study by Heeke et al., an assessment of routine clinical practice of liquid biopsy for testing of EGFR status in NSCLC was conducted in a single-center trial.[99] The authors analyzed 345 blood plasma samples by means of the US Food and Drug Administration (FDA) approved Cobas EGFR mutation test V2, and 103 samples by means of the Therascreen EGFR Plasma RSQ PCR Kit. The trial was performed over the time period of three years (comprising in total 395 plasma samples of 324 patients). Eleven plasma samples were independently validated using the Cobas Test, and 130 samples were further analyzed using Stilla digital PCR.[99] According to this study, the median time from blood puncture to the validated clinical report of the liquid biopsy was 4 working days. In 119 (30%) of the specimens, an activating EGFR mutation was found. The authors suggest, on the basis of their findings, that the Cobas test kit is more robust and produced more reproducible assays for the detection of EGFR mutations in plasma samples as compared to the Therascreen kit. Thus, it was primarily implemented as the principal testing device.[99] The additional use of digital polymerase chain reaction (dPCR) testing improved the detection of T790M mutations in the plasma samples, but not the detection of primary EGFR mutations. In this analysis, it was evident that liquid biopsies were mostly recommended for patients receiving EGFR TKI treatment. PCR-based assays were specifically requested for 183 (46%) of cases to search for T790M mutations – mostly because of progressive disease upon EGFR-TKI treatment. In 144 (36%) of cases, PCR-based assays were requested due to the impossibility of acquiring a conventional tissue sample.[99] The authors conclude that PCR-based assays are effective, especially when used supplementary to the Cobas EGFR mutation test kit. Turnaround time from blood taking to clinical report is short in liquid biopsy, and acceptance in patients is high because of the limited invasiveness and small risk of the procedure. The most effective use, according to the authors, is the search for resistance mutations in patients receiving EGFR-targeted treatment. Another promising opportunity for the use of liquid biopsy is NGS analysis of cfDNA, for the follow-up of the genomic profile of the tumor over the disease course.[99]

In 2018, the IASLC released a consensus paper with their current recommendations on performing liquid biopsy in lung cancer.[37] According to the IASLC, liquid biopsy comprises CTCs, circulating exosomes, platelet RNA and circulating tumor RNA (ctRNA) as well.[4,100] CtDNA still remains the most widely investigated method in liquid biopsy for lung cancer patients. It is crucial to point out, that the accessibility to different techniques, platforms, test reimbursements and drugs varies considerably between different countries and treatment facilities. Thus, the current standard of care and the clinicians' and pathologists' experience in a given treatment center have to be taken into account when giving recommendations on liquid biopsy as well.

At present, the difference between serum- and plasma analysis for variant detection in ctDNA is under investigation.[101,102] Randomized clinical phase III trials are currently ongoing for gefitinib (IPASS) and afatinib (LUX-Lung 3), which examine the EGFR mutation status in tumor DNA extracted from standard tissue biopsy specimens, comparing the results to EGFR analysis of ctDNA extracted from serum liquid biopsy specimens.[5,103] Sensitivity levels of ctDNA EGFR mutation analysis using a real-time PCR (qPCR)-based assay, according to these studies, added up to 43.1%, considering tissue-based analysis as a reference. In the phase IV clinical trial for gefitinib (IFUM) and the phase III trials for afatinib (LUX-Lung 6 and 3), EGFR mutation status was determined in plasma samples.[103–105] Sensitivity of plasma tests in these studies was 65.7% and 60.5%, respectively (the mutation detection rate using serum samples, however, was considerably lower with only 28.6%).[106]

In the ASSESS trial, which included 1,288 patients from Japan and Europe, the concordance among plasma samples and tissue-based analysis of EGFR mutations was 89%, showing a high specificity of 97%, yet a low sensitivity of only 46%.[107] In the EURTAC phase III study assessing erlotinib, the feasibility of ctDNA testing from blood samples (serum and plasma for each patient), evaluation of the EGFR mutation status and consecutive correlation with outcome, was carried out.[59] In ctDNA drawn from 97 blood samples at baseline, EGFR mutation status was evaluated by means of a peptide nucleic acid-mediated qPCR assay, and EGFR mutations were discovered in 78% of patients. The specificity, according to this study, reached 100%. In this analysis, both serum and plasma samples were used for analysis, however, the authors did not state whether there was a difference between the two options.[59]

For everyday clinical practice, the IASLC recommends the following claims, based on the data mentioned above:[4]

First, plasma analysis is preferred over serum for ctDNA extraction. Second, the maximum time limit from blood taking to the extraction of plasma must not exceed two hours in case of EDTA tubes, and three days in case of special ctDNA sampling tubes. Third, a double-spin plasma isolation technique is strongly suggested. Fourth, blood samples must not be frozen if the plasma has not yet been extracted, irrespective of the type of sampling tube. Fifth, EDTA tubes and cfDNA preservative tubes can both be used for ctDNA extraction – however, if using EDTA tubes, rapid sample processing is crucial. Sixth, two standard 10 mL tubes per patients should be drawn to enhance the accuracy of analysis. Seventh, DNA extraction has to be carried out with protocols or kits specifically designed for small fragmented DNA.[4]

Table 1 illustrates different liquid biopsy products currently tested in clinical studies, or already applied in everyday clinical routine.

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